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Suppose I have a huge N-dimensional database and want to store it using IPFS, is there any way I can shard my dataset in such a way that I get N hashes each for single dimension using IPFS?

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You can create your own sharding structure using the DAG API. You can learn about it through this examples https://github.com/ipfs/js-ipfs/tree/master/examples/traverse-ipld-graphs

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